PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G213700.1
Common NameB456_007G213700, LOC105803920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 268aa    MW: 29878.4 Da    PI: 9.4178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G213700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08172212954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Gorai.007G213700.1 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 212
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14167223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-6173212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-6186217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDVDMVKSST EDDHMDVMTM MMQMEEKLPD FCEPAFHTSP TLLPPETHFS NGTSSTTILP  60
TLPVYPNPNV SSINTFMTLP FGNGSNPVQE PITPPLQPHN ICSSNSKFKY PTPFNNANPY  120
PSSVDKKNSM AAMREMIFRI AAMQPIHIDP ESIKPPKRRN VKISKDPQSV AARHRRERIS  180
ERIRILQRLV PGGTKMDTAS MLDEAIHYVK FLKKQVQSLE QAAVNRPMGV GIPSATMANM  240
GYSNSLVKAC QPSHHHHQAV GNMQMLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491816.10.0PREDICTED: transcription factor HEC2
SwissprotQ9FHA72e-51HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0D2QX430.0A0A0D2QX43_G
STRINGPOPTR_0005s18210.17e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]